A new pipeline in IRIDA, the AMR Detection pipeline, has been released https://github.com/phac-nml/irida-plugin-amr-detection. This pipeline makes use of the RGI/CARD and staramr tools for detection of antimicrobial resistance genes. Pipeline …
IRIDA provides sequencing data and metadata management functionality to keep track of all your data from sequencer to result.
IRIDA provides a collection of workflows designed for public health genomics.
IRIDA's genomic epidemiology ontology supports the integration of genomics data with epidemiological, lab and clinical information.
IRIDA contains in-browser data visualization and a REST API for connecting external visualization systems.